Variant report

Variant	rs7099639
Chromosome Location	chr10:92742722-92742723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10881868	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12250934	0.82[ASN][1000 genomes]
rs1334579	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2901176	0.85[EUR][1000 genomes]
rs4933202	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4933626	0.82[ASN][1000 genomes]
rs4933636	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs7897249	0.83[EUR][1000 genomes]
rs7909942	0.89[CHB][hapmap]
rs7916859	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7099639	LOC643599	cis	multi-tissue	Pritchard

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92729200-92744400	Weak transcription	Psoas Muscle	Psoas
2	chr10:92733600-92743800	Weak transcription	Right Atrium	heart
3	chr10:92737400-92743800	Weak transcription	Right Ventricle	heart
4	chr10:92738000-92743400	Weak transcription	GM12878-XiMat	blood
5	chr10:92738000-92743600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr10:92739200-92743800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:92739400-92746000	Weak transcription	Aorta	Aorta
8	chr10:92741800-92742800	Genic enhancers	Fetal Thymus	thymus
9	chr10:92742000-92742800	Enhancers	HepG2	liver
10	chr10:92742000-92743600	Enhancers	Thymus	Thymus
11	chr10:92742400-92742800	Genic enhancers	Left Ventricle	heart
12	chr10:92742400-92742800	Transcr. at gene 5' and 3'	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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