Variant report

Variant	rs12250934
Chromosome Location	chr10:92724024-92724025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92717534..92719084-chr10:92723226..92725595,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10881868	0.86[ASN][1000 genomes]
rs11186416	0.88[AMR][1000 genomes]
rs12259812	0.88[AMR][1000 genomes]
rs12259967	0.88[AMR][1000 genomes]
rs17103770	0.81[AMR][1000 genomes]
rs28662270	0.88[AMR][1000 genomes]
rs4933624	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4933626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4933637	0.88[AMR][1000 genomes]
rs4933640	0.81[AMR][1000 genomes]
rs59534805	0.88[AMR][1000 genomes]
rs7099639	0.82[ASN][1000 genomes]
rs7909942	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92715200-92737000	Weak transcription	Thymus	Thymus
2	chr10:92720600-92725200	Weak transcription	Fetal Heart	heart
3	chr10:92720600-92728200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:92721200-92724600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:92721200-92731600	Weak transcription	Aorta	Aorta
6	chr10:92721600-92724800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:92721600-92728200	Weak transcription	A549	lung
8	chr10:92721800-92724200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:92721800-92724400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:92721800-92724600	Weak transcription	NHLF	lung
11	chr10:92722200-92724200	Weak transcription	Psoas Muscle	Psoas
12	chr10:92722200-92724200	Weak transcription	NHDF-Ad	bronchial
13	chr10:92722200-92724600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:92722600-92730600	Genic enhancers	Dnd41	blood
15	chr10:92723000-92724600	Genic enhancers	Fetal Thymus	thymus
16	chr10:92723400-92724400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:92723400-92725000	Enhancers	Right Atrium	heart
18	chr10:92723400-92725800	Enhancers	Right Ventricle	heart
19	chr10:92723400-92727800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:92723800-92724200	Weak transcription	Osteobl	bone
21	chr10:92723800-92725800	Enhancers	HSMMtube	muscle
22	chr10:92724000-92725200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:92724000-92725800	Enhancers	Left Ventricle	heart
24	chr10:92724000-92725800	Enhancers	HSMM	muscle
25	chr10:92724000-92726400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:92724000-92726800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links