Variant report

Variant	rs4933624
Chromosome Location	chr10:92698251-92698252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92696774..92699626-chr10:92704763..92707739,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10881868	0.81[ASN][1000 genomes]
rs12250934	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4933626	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7909942	0.88[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92688400-92699800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:92692600-92698600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:92695200-92698600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:92695600-92698400	Enhancers	Fetal Heart	heart
5	chr10:92695600-92698800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:92695600-92699600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:92695600-92704600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:92695600-92705200	Enhancers	Dnd41	blood
9	chr10:92696200-92700200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:92696400-92704600	Weak transcription	Thymus	Thymus
11	chr10:92696600-92698400	Enhancers	HepG2	liver
12	chr10:92697400-92699400	Weak transcription	Fetal Thymus	thymus
13	chr10:92697600-92699200	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:92697800-92705000	Weak transcription	Osteobl	bone
15	chr10:92698000-92698800	Enhancers	Brain Germinal Matrix	brain
16	chr10:92698000-92702600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:92698000-92704400	Weak transcription	HSMM	muscle
18	chr10:92698200-92699000	Weak transcription	HUVEC	blood vessel
19	chr10:92698200-92699200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:92698200-92699600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:92698200-92705400	Weak transcription	Aorta	Aorta

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