Variant report

Variant	rs4933626
Chromosome Location	chr10:92708018-92708019
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10881868	0.86[ASN][1000 genomes]
rs11186416	0.88[AMR][1000 genomes]
rs12250934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12259812	0.88[AMR][1000 genomes]
rs12259967	0.88[AMR][1000 genomes]
rs17103770	0.81[AMR][1000 genomes]
rs28662270	0.88[AMR][1000 genomes]
rs4933624	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4933637	0.88[AMR][1000 genomes]
rs4933640	0.81[AMR][1000 genomes]
rs59534805	0.88[AMR][1000 genomes]
rs7099639	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92707000-92708200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:92707000-92708600	Flanking Active TSS	Dnd41	blood
3	chr10:92707600-92709000	Enhancers	Fetal Thymus	thymus
4	chr10:92707600-92719400	Weak transcription	HMEC	breast
5	chr10:92707800-92719200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:92708000-92714400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links