Variant report

Variant	rs2121199
Chromosome Location	chr9:98044499-98044500
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16912021	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709091	1.00[AMR][1000 genomes]
rs4647412	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647460	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647515	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98028400-98045400	Weak transcription	Gastric	stomach
2	chr9:98032000-98045400	Weak transcription	Pancreas	Pancrea
3	chr9:98038600-98045400	Weak transcription	Psoas Muscle	Psoas
4	chr9:98043600-98047000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:98044400-98045200	Enhancers	HepG2	liver
6	chr9:98044400-98046000	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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