Variant report

Variant	rs4647412
Chromosome Location	chr9:98011913-98011914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98010532..98014660-chr9:98272495..98275814,3	K562	blood:
2	chr9:98005780..98007562-chr9:98010261..98012480,2	K562	blood:
3	chr9:98007562..98009225-chr9:98010300..98012768,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16912021	0.84[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912061	0.87[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2121199	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709091	1.00[AMR][1000 genomes]
rs4647460	0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647515	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97973600-98024000	Weak transcription	Gastric	stomach
2	chr9:97981400-98012400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:97983400-98012400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:97987200-98015400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:97988400-98012200	Weak transcription	Fetal Kidney	kidney
6	chr9:97989200-98012400	Weak transcription	Ovary	ovary
7	chr9:97989400-98012400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:97989400-98013400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:97989600-98012200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:97990200-98013400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr9:97990400-98012600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:97991200-98024000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:97992600-98013400	Weak transcription	Liver	Liver
14	chr9:97994800-98017200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:97995400-98012800	Weak transcription	HSMM	muscle
16	chr9:97996400-98012400	Weak transcription	Psoas Muscle	Psoas
17	chr9:97996800-98012800	Weak transcription	HSMMtube	muscle
18	chr9:97997600-98012400	Weak transcription	Fetal Brain Male	brain
19	chr9:97999800-98019000	Weak transcription	Aorta	Aorta
20	chr9:98001200-98012400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:98002400-98015200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:98002600-98012400	Weak transcription	Esophagus	oesophagus
23	chr9:98004800-98012200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:98005200-98012400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:98005400-98012400	Weak transcription	Fetal Thymus	thymus
26	chr9:98005400-98013000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr9:98005600-98012400	Weak transcription	Colon Smooth Muscle	Colon
28	chr9:98005600-98012400	Weak transcription	HepG2	liver
29	chr9:98006000-98016800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr9:98007000-98012400	Weak transcription	Brain Germinal Matrix	brain
31	chr9:98007000-98013200	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:98007400-98024000	Weak transcription	Small Intestine	intestine
33	chr9:98008000-98012600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr9:98008400-98012200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr9:98008600-98012400	Weak transcription	Right Atrium	heart
36	chr9:98009000-98018000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:98009000-98026600	Weak transcription	A549	lung
38	chr9:98009200-98012400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr9:98009200-98012400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr9:98009200-98012400	Weak transcription	Pancreas	Pancrea
41	chr9:98009200-98012600	Weak transcription	Fetal Lung	lung
42	chr9:98009200-98013200	Weak transcription	Spleen	Spleen
43	chr9:98009200-98013200	Weak transcription	GM12878-XiMat	blood
44	chr9:98009200-98013600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr9:98009200-98014400	Weak transcription	Lung	lung
46	chr9:98009200-98016800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr9:98009200-98027600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr9:98009400-98012400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr9:98009400-98014600	Weak transcription	Primary T cells from cord blood	blood
50	chr9:98009400-98019400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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