Variant report

Variant	rs2122178
Chromosome Location	chr2:187604696-187604697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1451873	1.00[YRI][hapmap]
rs2230616	1.00[YRI][hapmap]
rs2594705	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2595374	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2595396	1.00[AFR][1000 genomes]
rs7577982	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187592200-187618600	Weak transcription	Osteobl	bone
2	chr2:187596600-187611400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:187596600-187626200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:187598600-187621200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:187599600-187631000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:187600000-187613200	Weak transcription	Pancreas	Pancrea
7	chr2:187600200-187611000	Weak transcription	Brain Angular Gyrus	brain
8	chr2:187603000-187607400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:187603000-187612800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:187603200-187626400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:187603200-187626600	Weak transcription	Fetal Stomach	stomach
12	chr2:187603400-187605200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:187603400-187612600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:187603400-187612800	Weak transcription	Brain Anterior Caudate	brain
15	chr2:187603400-187613000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:187603400-187626400	Weak transcription	Fetal Muscle Leg	muscle
17	chr2:187603600-187626600	Weak transcription	Left Ventricle	heart
18	chr2:187603800-187605600	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:187603800-187611800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr2:187603800-187612800	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:187603800-187621200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr2:187604000-187609800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr2:187604000-187613200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr2:187604000-187618600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr2:187604200-187605400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:187604600-187604800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
27	chr2:187604600-187604800	ZNF genes & repeats	Fetal Brain Female	brain

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