Variant report

Variant	rs2123351
Chromosome Location	chr10:4862582-4862583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1005907	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12764114	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769532	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4855400-4867400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:4855600-4862800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:4857600-4868000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:4860800-4863000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:4862200-4862800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:4862400-4863400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:4862400-4863800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:4862400-4864000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:4862400-4865000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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