Variant report

Variant	rs12769532
Chromosome Location	chr10:4858328-4858329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4857887..4858608-chr10:5325585..5326522,2	K562	blood:
2	chr10:4855444..4858431-chr10:5530481..5532071,2	MCF-7	breast:
3	chr10:4857632..4858594-chr10:4891971..4892610,3	K562	blood:
4	chr10:4857671..4858400-chr10:5624407..5624994,2	K562	blood:
5	chr10:4857209..4858993-chr10:4874035..4875917,2	K562	blood:
6	chr10:4857556..4858565-chr10:4881032..4882202,10	MCF-7	breast:
7	chr10:4857628..4858745-chr10:4881174..4882066,5	MCF-7	breast:
8	chr10:4856147..4859117-chr10:5323721..5326556,2	K562	blood:
9	chr10:4856908..4859105-chr10:4868238..4871321,3	MCF-7	breast:
10	chr10:4857079..4859136-chr10:4895299..4898229,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1005907	0.93[ASN][1000 genomes]
rs12764114	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123351	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35629732	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv1805102	chr10:4856852-4858356	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1806530	chr10:4856852-4858356	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3522611	chr10:4857002-4859200	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3522612	chr10:4857002-4859200	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv12530	chr10:4857721-4858391	Active TSS Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv821103	chr10:4857721-4858391	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4855400-4867400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:4855600-4862800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:4857400-4860600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:4857600-4858400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:4857600-4858600	Weak transcription	A549	lung
6	chr10:4857600-4858600	Weak transcription	K562	blood
7	chr10:4857600-4868000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr10:4857800-4861800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:4857800-4862400	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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