Variant report

Variant	rs35629732
Chromosome Location	chr10:4855366-4855367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4852442..4855384-chr10:4879168..4880754,2	K562	blood:
2	chr10:4855102..4856671-chr10:5498046..5499803,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10904348	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12764114	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12769532	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2167704	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4853200-4855600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:4853200-4857800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:4853400-4855600	Enhancers	HMEC	breast
4	chr10:4853600-4855600	Enhancers	HSMM	muscle
5	chr10:4853800-4855400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:4853800-4855600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:4853800-4855600	Enhancers	NHLF	lung
8	chr10:4853800-4855800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:4854000-4855400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:4854000-4855600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:4854000-4855800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:4854200-4855400	Enhancers	Spleen	Spleen
13	chr10:4854200-4855600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:4854200-4855600	Flanking Active TSS	A549	lung
15	chr10:4854200-4855600	Enhancers	NH-A	brain
16	chr10:4854200-4855600	Enhancers	NHDF-Ad	bronchial
17	chr10:4854600-4855400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:4854600-4857600	Enhancers	Osteobl	bone
19	chr10:4854800-4855400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:4854800-4855400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:4854800-4855400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:4854800-4855400	Enhancers	Esophagus	oesophagus
23	chr10:4854800-4855400	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr10:4854800-4855600	Enhancers	K562	blood
25	chr10:4854800-4855600	Enhancers	NHEK	skin
26	chr10:4855000-4855600	Enhancers	HUVEC	blood vessel
27	chr10:4855000-4857200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:4855000-4857200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:4855200-4855400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:4855200-4855600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links