Variant report

Variant	rs2167704
Chromosome Location	chr10:4845062-4845063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10904348	0.90[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12764114	0.80[AFR][1000 genomes]
rs2961563	0.82[CHB][hapmap]
rs35629732	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4488103	0.82[CHB][hapmap]
rs6601867	0.82[CHB][hapmap]
rs7090869	0.82[CHB][hapmap]
rs7922573	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4841800-4851200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:4843800-4845600	Enhancers	NHEK	skin
3	chr10:4843800-4846000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:4844000-4848800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:4844000-4850400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:4844600-4845800	Enhancers	HMEC	breast
7	chr10:4844800-4845600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:4844800-4846200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:4845000-4845600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:4845000-4845800	Enhancers	HepG2	liver
11	chr10:4845000-4845800	Enhancers	NHDF-Ad	bronchial
12	chr10:4845000-4847600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:4845000-4848200	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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