Variant report

Variant	rs2961563
Chromosome Location	chr10:4867468-4867469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2924277	0.85[GIH][hapmap]
rs2924278	0.89[GIH][hapmap]
rs2924279	0.88[ASW][hapmap];0.83[GIH][hapmap];0.84[MEX][hapmap];0.97[MKK][hapmap]
rs2961597	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2961620	0.82[ASW][hapmap];0.83[GIH][hapmap];0.84[MEX][hapmap];0.89[MKK][hapmap]
rs4393217	0.81[ASN][1000 genomes]
rs4488103	0.81[ASN][1000 genomes]
rs61830333	0.81[ASN][1000 genomes]
rs6601867	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7089222	0.81[ASN][1000 genomes]
rs7090869	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7092182	0.89[ASN][1000 genomes]
rs7922573	0.82[CHD][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv948794	chr10:4863093-5227382	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4857600-4868000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr10:4863600-4867800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:4863600-4867800	Weak transcription	Osteobl	bone
4	chr10:4863600-4868000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:4864000-4867800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:4864000-4867800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:4864600-4868200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:4865000-4867800	Weak transcription	Fetal Heart	heart
9	chr10:4866800-4867800	Enhancers	K562	blood
10	chr10:4867200-4867600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:4867400-4867800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:4867400-4868000	ZNF genes & repeats	A549	lung
13	chr10:4867400-4868200	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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