Variant report

Variant	rs7090869
Chromosome Location	chr10:4930520-4930521
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4930274..4933075-chr10:4935096..4936648,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10751991	0.89[AMR][1000 genomes]
rs10904366	0.89[AMR][1000 genomes]
rs12098333	0.83[ASN][1000 genomes]
rs1901645	0.89[MKK][hapmap]
rs2924278	0.81[MKK][hapmap]
rs2961563	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2961570	0.86[MKK][hapmap]
rs2961597	0.82[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34217839	0.81[ASN][1000 genomes]
rs3924660	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs3924662	0.92[ASW][hapmap];0.93[GIH][hapmap];0.91[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap]
rs4242772	0.91[MKK][hapmap]
rs4242774	0.89[AMR][1000 genomes]
rs4242780	0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4303139	0.83[ASN][1000 genomes]
rs4317889	1.00[ASW][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4393217	0.87[ASN][1000 genomes]
rs4465268	0.89[AMR][1000 genomes]
rs4488103	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4562702	0.89[AMR][1000 genomes]
rs4578280	0.89[AMR][1000 genomes]
rs4626979	0.89[AMR][1000 genomes]
rs4881369	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61830333	0.87[ASN][1000 genomes]
rs6601866	0.89[AMR][1000 genomes]
rs6601867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077134	0.89[AMR][1000 genomes]
rs7092182	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093622	0.85[CHB][hapmap]
rs7912440	0.91[MKK][hapmap]
rs7920941	0.84[AMR][1000 genomes]
rs7922573	1.00[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv948794	chr10:4863093-5227382	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1045155	chr10:4872239-5211318	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1040343	chr10:4872814-5196815	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540462	chr10:4872814-5196815	Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv869470	chr10:4878904-5203685	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv466713	chr10:4901798-5319679	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv549881	chr10:4901798-5319679	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
10	nsv1042940	chr10:4916614-4974581	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv947581	chr10:4925629-4933637	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1050246	chr10:4927428-5211318	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4908800-4944200	Weak transcription	Adipose Nuclei	Adipose
2	chr10:4910400-4936400	Weak transcription	Left Ventricle	heart
3	chr10:4915800-4943600	Weak transcription	Aorta	Aorta
4	chr10:4916800-4936400	Weak transcription	Pancreas	Pancrea
5	chr10:4918400-4968000	Weak transcription	Primary T cells from cord blood	blood
6	chr10:4918800-4931400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:4919200-4936800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:4921600-4930800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:4925800-4936400	Weak transcription	Right Atrium	heart
10	chr10:4926200-4931400	Weak transcription	HepG2	liver
11	chr10:4927800-4936200	Weak transcription	Lung	lung
12	chr10:4929200-4932200	Enhancers	Fetal Stomach	stomach
13	chr10:4929800-4931200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:4930000-4930600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:4930200-4930800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:4930200-4931800	Weak transcription	Liver	Liver
17	chr10:4930200-4932000	Weak transcription	Primary hematopoietic stem cells	blood

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