Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10784253	0.82[MEX][hapmap]
rs10877721	0.89[CEU][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.82[TSI][hapmap]
rs1395491	0.87[EUR][1000 genomes]
rs1506850	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1876279	0.90[EUR][1000 genomes]
rs2063062	0.85[EUR][1000 genomes]
rs2089375	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4304856	0.85[EUR][1000 genomes]
rs6581420	0.82[MEX][hapmap]
rs7133799	0.90[EUR][1000 genomes]
rs7135068	0.87[EUR][1000 genomes]
rs7135544	0.85[EUR][1000 genomes]
rs7136013	0.85[EUR][1000 genomes]
rs7136249	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7306570	0.85[EUR][1000 genomes]
rs7309363	0.88[EUR][1000 genomes]
rs7399207	0.89[CEU][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.82[TSI][hapmap]
rs7485027	0.82[MEX][hapmap]
rs7489171	0.82[MEX][hapmap]
rs7964678	0.88[EUR][1000 genomes]
rs7973303	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs7973844	0.89[CEU][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832434	chr12:61823919-62033626	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2123721	ARHGEF25	cis	cerebellum	SCAN
rs2123721	R3HDM2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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