Variant report

Variant	rs2124396
Chromosome Location	chr5:114650716-114650717
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs117060	0.81[CEU][hapmap];0.96[AMR][1000 genomes]
rs166459	0.80[AMR][1000 genomes]
rs17137637	0.81[AMR][1000 genomes]
rs185566	1.00[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2053697	0.85[CHD][hapmap]
rs2112360	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2112361	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2545430	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs265412	0.89[CHD][hapmap]
rs265421	0.89[CHD][hapmap]
rs265425	0.89[CHD][hapmap]
rs265430	0.92[CHD][hapmap]
rs265442	0.92[CHD][hapmap]
rs267286	1.00[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs267287	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs267288	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs267290	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs267292	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs267295	0.96[CHD][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.96[AMR][1000 genomes]
rs267297	0.85[CHD][hapmap]
rs267298	0.89[CHD][hapmap]
rs267299	0.81[CEU][hapmap];0.96[AMR][1000 genomes]
rs267300	0.81[CEU][hapmap];0.96[CHD][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.96[AMR][1000 genomes]
rs267301	0.81[CEU][hapmap];0.96[AMR][1000 genomes]
rs267302	0.81[CEU][hapmap];0.92[AMR][1000 genomes]
rs267303	0.92[CHD][hapmap]
rs267304	0.92[CHD][hapmap]
rs267306	0.89[AMR][1000 genomes]
rs267307	0.81[CEU][hapmap];0.96[CHD][hapmap];0.89[MEX][hapmap];0.89[AMR][1000 genomes]
rs3100784	0.81[CEU][hapmap];0.96[CHD][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.92[AMR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114642200-114651200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:114642200-114651400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:114648600-114651200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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