Variant report

Variant	rs17137637
Chromosome Location	chr5:114678653-114678654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs117060	0.85[CEU][hapmap]
rs11741985	1.00[ASN][1000 genomes]
rs11749663	0.86[ASN][1000 genomes]
rs13169467	1.00[ASN][1000 genomes]
rs13179618	0.93[ASN][1000 genomes]
rs13181560	0.86[ASN][1000 genomes]
rs1350106	0.93[ASN][1000 genomes]
rs185566	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[AMR][1000 genomes]
rs2112360	0.81[AMR][1000 genomes]
rs2112361	0.81[AMR][1000 genomes]
rs2121099	0.93[ASN][1000 genomes]
rs2124396	0.81[AMR][1000 genomes]
rs2416412	1.00[ASN][1000 genomes]
rs2545430	0.81[AMR][1000 genomes]
rs267286	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[AMR][1000 genomes]
rs267287	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[AMR][1000 genomes]
rs267288	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[AMR][1000 genomes]
rs267290	0.81[AMR][1000 genomes]
rs267292	0.81[AMR][1000 genomes]
rs267299	0.85[CEU][hapmap]
rs267300	0.81[CEU][hapmap]
rs267301	0.85[CEU][hapmap]
rs267302	0.85[CEU][hapmap]
rs267307	0.81[CEU][hapmap]
rs3100784	0.81[CEU][hapmap]
rs34536681	0.90[ASN][1000 genomes]
rs6878783	0.86[ASN][1000 genomes]
rs6886607	0.90[ASN][1000 genomes]
rs7734039	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114673600-114679200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:114674400-114682000	Weak transcription	Fetal Intestine Large	intestine
3	chr5:114677200-114679600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:114677200-114680200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:114677200-114680400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:114677400-114679000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:114677400-114679800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:114677400-114680200	Enhancers	Hela-S3	cervix
9	chr5:114677600-114679000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:114678000-114679000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:114678200-114679000	Enhancers	Duodenum Mucosa	Duodenum
12	chr5:114678200-114679400	Enhancers	Fetal Intestine Small	intestine
13	chr5:114678200-114680000	Enhancers	Stomach Mucosa	stomach
14	chr5:114678400-114679000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:114678400-114679000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:114678400-114679000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:114678400-114679000	Enhancers	Pancreas	Pancrea
18	chr5:114678400-114679200	Enhancers	Fetal Muscle Leg	muscle
19	chr5:114678400-114679800	Enhancers	HSMMtube	muscle
20	chr5:114678600-114679000	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links