Variant report

Variant	rs11749663
Chromosome Location	chr5:114655993-114655994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11741985	0.86[ASN][1000 genomes]
rs11955800	0.95[AFR][1000 genomes]
rs13169467	0.86[ASN][1000 genomes]
rs13179618	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13181560	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1350106	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17137637	0.86[ASN][1000 genomes]
rs185566	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2121099	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2416412	0.86[ASN][1000 genomes]
rs267286	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs267287	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs267288	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs34536681	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6878783	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6886607	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6894010	0.96[AFR][1000 genomes]
rs7734039	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11749663	CCDC112	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114652400-114660600	Weak transcription	Left Ventricle	heart
2	chr5:114653400-114656000	Enhancers	Fetal Heart	heart
3	chr5:114653800-114660800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:114654000-114665600	Weak transcription	Right Atrium	heart
5	chr5:114655600-114656000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr5:114655600-114656000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr5:114655800-114656000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:114655800-114656000	Enhancers	Esophagus	oesophagus
9	chr5:114655800-114656000	Enhancers	Right Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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