Variant report

Variant	rs6878783
Chromosome Location	chr5:114669053-114669054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11741985	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11749663	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13169467	0.95[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs13179618	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13181560	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1350106	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17137637	0.86[ASN][1000 genomes]
rs185566	0.90[JPT][hapmap]
rs2121099	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2416412	0.95[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs267286	0.91[JPT][hapmap]
rs267287	0.92[JPT][hapmap]
rs267288	0.92[JPT][hapmap]
rs269492	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34536681	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6886607	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7734039	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv968979	chr5:114662534-114669970	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114662000-114670400	Weak transcription	Psoas Muscle	Psoas
2	chr5:114665800-114670800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:114668600-114669200	Weak transcription	Pancreas	Pancrea
4	chr5:114668800-114669400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr5:114668800-114669600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:114668800-114669600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:114669000-114669400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:114669000-114669400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:114669000-114669400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:114669000-114669400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:114669000-114669400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:114669000-114669400	ZNF genes & repeats	Aorta	Aorta
13	chr5:114669000-114669400	Enhancers	Fetal Muscle Leg	muscle
14	chr5:114669000-114669400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr5:114669000-114669400	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links