Variant report

Variant	rs6886607
Chromosome Location	chr5:114658143-114658144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11741985	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11749663	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11955800	0.82[AMR][1000 genomes]
rs13169467	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13179618	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13181560	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1350106	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17137637	0.90[ASN][1000 genomes]
rs185566	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs2121099	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2416412	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs267286	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs267287	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs267288	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs34536681	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6878783	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6894010	0.87[AMR][1000 genomes]
rs7734039	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6886607	CCDC112	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114652400-114660600	Weak transcription	Left Ventricle	heart
2	chr5:114653800-114660800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:114654000-114665600	Weak transcription	Right Atrium	heart
4	chr5:114656000-114660400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:114656000-114660600	Weak transcription	Fetal Heart	heart
6	chr5:114656000-114660600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr5:114657400-114661000	Weak transcription	NHDF-Ad	bronchial
8	chr5:114657600-114660400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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