Variant report

Variant	rs2126822
Chromosome Location	chr3:21636633-21636634
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21634166..21637073-chr3:21637785..21639795,3	K562	blood:
2	chr3:21631953..21633600-chr3:21636027..21637703,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11129010	0.94[CEU][hapmap];0.83[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11708571	0.88[CEU][hapmap];0.82[YRI][hapmap];0.96[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11716643	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12491476	0.88[CEU][hapmap];0.82[YRI][hapmap];0.96[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12493593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494223	0.94[CEU][hapmap];0.82[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13061063	0.82[EUR][1000 genomes]
rs13082588	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096493	0.89[CEU][hapmap];0.83[YRI][hapmap];0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1478069	0.81[CEU][hapmap]
rs151281	1.00[YRI][hapmap]
rs161199	1.00[YRI][hapmap]
rs233134	1.00[ASN][1000 genomes]
rs28520931	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34356086	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35612116	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3843877	0.84[CEU][hapmap];0.83[YRI][hapmap];0.96[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4616665	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4858006	0.84[CEU][hapmap]
rs62236134	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62236136	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62236140	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6762855	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6767992	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv589895	chr3:21622387-21638815	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1003451	chr3:21623631-21662267	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv997373	chr3:21624940-21646812	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21618400-21643200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:21625000-21655200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:21634200-21660200	Weak transcription	K562	blood
4	chr3:21636200-21647400	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links