Variant report

Variant	rs2127172
Chromosome Location	chr8:2147777-2147778
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYOM2-7	chr8:2147223-2148357	NONHSAT124710

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13263567	0.86[ASN][1000 genomes]
rs1478959	0.96[ASN][1000 genomes]
rs2306255	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2581592	0.96[ASN][1000 genomes]
rs2581594	0.94[AFR][1000 genomes]
rs2618845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34098357	0.93[ASN][1000 genomes]
rs34646644	0.96[ASN][1000 genomes]
rs34809828	0.96[ASN][1000 genomes]
rs56654543	0.96[ASN][1000 genomes]
rs58554246	0.96[ASN][1000 genomes]
rs59082971	0.96[ASN][1000 genomes]
rs6558622	0.96[ASN][1000 genomes]
rs6983721	0.96[ASN][1000 genomes]
rs6987958	0.96[ASN][1000 genomes]
rs6989068	0.96[ASN][1000 genomes]
rs7005235	0.96[ASN][1000 genomes]
rs7009069	0.90[ASN][1000 genomes]
rs7017755	0.96[ASN][1000 genomes]
rs7017761	1.00[EUR][1000 genomes]
rs7018266	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71499064	0.93[ASN][1000 genomes]
rs71499065	0.93[ASN][1000 genomes]
rs71519810	0.96[ASN][1000 genomes]
rs71519812	0.93[ASN][1000 genomes]
rs73559857	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73657797	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2139800-2147800	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr8:2141200-2147800	Enhancers	Primary T cells fromperipheralblood	blood
3	chr8:2143000-2148400	Enhancers	Fetal Thymus	thymus
4	chr8:2144000-2150600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr8:2145800-2153400	Enhancers	Primary T cells from cord blood	blood
6	chr8:2146200-2152800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:2146600-2149400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr8:2146600-2149400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr8:2146600-2150200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr8:2146800-2148800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr8:2146800-2148800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr8:2147000-2147800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:2147000-2148600	Weak transcription	Fetal Brain Male	brain
14	chr8:2147000-2148800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:2147000-2149200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr8:2147000-2149400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr8:2147000-2149400	Weak transcription	Thymus	Thymus
18	chr8:2147200-2149200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr8:2147400-2148800	Weak transcription	Pancreas	Pancrea

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