Variant report

Variant	rs71519810
Chromosome Location	chr8:2155761-2155762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11785628	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11997985	0.92[EUR][1000 genomes]
rs13263567	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13264219	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs13265184	0.91[EUR][1000 genomes]
rs1478959	0.93[ASN][1000 genomes]
rs17064898	0.92[EUR][1000 genomes]
rs17064914	0.88[EUR][1000 genomes]
rs2127172	0.96[ASN][1000 genomes]
rs2306255	0.96[ASN][1000 genomes]
rs2405490	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2581592	0.93[ASN][1000 genomes]
rs2618845	0.96[ASN][1000 genomes]
rs34017823	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34098357	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34317390	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34432224	0.89[EUR][1000 genomes]
rs34646644	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34809828	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34819134	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34874394	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35051872	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35466354	1.00[AFR][1000 genomes]
rs35514341	0.88[EUR][1000 genomes]
rs56654543	1.00[ASN][1000 genomes]
rs58554246	1.00[ASN][1000 genomes]
rs59082971	1.00[ASN][1000 genomes]
rs6558622	1.00[ASN][1000 genomes]
rs6983721	1.00[ASN][1000 genomes]
rs6987958	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989068	1.00[ASN][1000 genomes]
rs7005235	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009069	0.93[ASN][1000 genomes]
rs7017755	1.00[ASN][1000 genomes]
rs7018266	1.00[ASN][1000 genomes]
rs71499064	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs71499065	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71519807	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs71519808	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs71519809	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs71519811	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs71519812	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71519813	0.88[EUR][1000 genomes]
rs73559857	1.00[ASN][1000 genomes]
rs73657797	1.00[ASN][1000 genomes]
rs958660	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2151600-2166800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr8:2151800-2157200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:2151800-2158600	Weak transcription	Psoas Muscle	Psoas
4	chr8:2151800-2166800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:2152600-2162600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr8:2153400-2159000	Weak transcription	Pancreas	Pancrea
7	chr8:2154400-2156200	Enhancers	Primary T helper cells fromperipheralblood	blood

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