Variant report

Variant	rs34874394
Chromosome Location	chr8:2158890-2158891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11785628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11997985	0.92[EUR][1000 genomes]
rs13263567	0.83[EUR][1000 genomes]
rs13264219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13265184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17064898	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17064914	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2405490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34017823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34098357	0.90[EUR][1000 genomes]
rs34317390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34432224	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34646644	0.94[EUR][1000 genomes]
rs34809828	0.95[EUR][1000 genomes]
rs34819134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35051872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35466354	1.00[AFR][1000 genomes]
rs35514341	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6987958	0.94[EUR][1000 genomes]
rs7005235	0.89[EUR][1000 genomes]
rs71499065	0.90[EUR][1000 genomes]
rs71519807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71519808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71519809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71519810	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs71519811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71519812	0.94[EUR][1000 genomes]
rs71519813	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs958660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2151600-2166800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr8:2151800-2166800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr8:2152600-2162600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr8:2153400-2159000	Weak transcription	Pancreas	Pancrea
5	chr8:2158400-2159400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr8:2158600-2159000	Enhancers	Right Ventricle	heart
7	chr8:2158600-2159200	Enhancers	Left Ventricle	heart
8	chr8:2158600-2159600	Enhancers	Fetal Muscle Leg	muscle
9	chr8:2158600-2160800	Enhancers	Psoas Muscle	Psoas
10	chr8:2158800-2159200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:2158800-2159200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr8:2158800-2159600	Enhancers	Fetal Thymus	thymus

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