Variant report

Variant	rs213167
Chromosome Location	chr15:57240786-57240787
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57210198..57214861-chr15:57238728..57241582,5	K562	blood:
2	chr15:57213053..57214861-chr15:57239551..57242181,2	K562	blood:

Variant related genes	Relation type
ENSG00000140262	Chromatin interaction
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16953316	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57212400-57256000	Weak transcription	Pancreas	Pancrea
2	chr15:57212600-57241000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:57213200-57256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:57216400-57241800	Weak transcription	Fetal Brain Male	brain
5	chr15:57222600-57250200	Weak transcription	NH-A	brain
6	chr15:57222800-57240800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:57222800-57255000	Weak transcription	HMEC	breast
8	chr15:57224600-57248600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr15:57225000-57244200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:57225000-57249000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:57226400-57242000	Weak transcription	HUVEC	blood vessel
12	chr15:57227000-57249800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:57227600-57260600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:57228000-57242400	Weak transcription	Fetal Intestine Small	intestine
15	chr15:57228200-57260600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:57229400-57255800	Weak transcription	Fetal Stomach	stomach
17	chr15:57231200-57240800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:57232000-57256000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:57233000-57250200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:57233800-57242000	Weak transcription	Ovary	ovary
21	chr15:57234200-57240800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr15:57234400-57249000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr15:57236800-57249800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:57237000-57242000	Weak transcription	Brain Anterior Caudate	brain
25	chr15:57237200-57241800	Weak transcription	Fetal Heart	heart
26	chr15:57238200-57240800	Weak transcription	Fetal Lung	lung
27	chr15:57238200-57240800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:57238200-57249000	Weak transcription	HSMM	muscle
29	chr15:57238400-57240800	Weak transcription	Adipose Nuclei	Adipose
30	chr15:57238400-57241200	Weak transcription	Fetal Kidney	kidney
31	chr15:57238400-57241600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr15:57238400-57242800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:57238400-57243400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr15:57238400-57247800	Weak transcription	NHDF-Ad	bronchial
35	chr15:57238400-57249000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr15:57238400-57256200	Weak transcription	K562	blood
37	chr15:57238600-57240800	Weak transcription	Fetal Muscle Leg	muscle
38	chr15:57238600-57241200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:57238600-57243200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr15:57238600-57245000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:57238600-57248200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:57238800-57241200	Enhancers	HepG2	liver
43	chr15:57238800-57241800	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:57238800-57244000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr15:57238800-57244000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:57239000-57246400	Weak transcription	Fetal Intestine Large	intestine
47	chr15:57239400-57242200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:57239600-57240800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr15:57239600-57241400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:57239600-57242000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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