Variant report

Variant	rs16953316
Chromosome Location	chr15:57221178-57221179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57219695..57221734-chr15:57225928..57228525,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11858471	1.00[YRI][hapmap]
rs12437713	1.00[ASW][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];0.95[YRI][hapmap]
rs12900589	0.94[YRI][hapmap]
rs12900874	1.00[YRI][hapmap]
rs1647377	1.00[EUR][1000 genomes]
rs16977155	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977181	1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs16977199	1.00[YRI][hapmap]
rs16977201	1.00[YRI][hapmap]
rs16977217	1.00[YRI][hapmap]
rs16977218	1.00[YRI][hapmap]
rs16977235	0.95[YRI][hapmap]
rs16977242	0.95[YRI][hapmap]
rs16977244	1.00[MKK][hapmap]
rs16977245	0.89[YRI][hapmap]
rs17415738	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap]
rs213167	1.00[CHB][hapmap]
rs2169466	0.95[YRI][hapmap]
rs28421123	1.00[EUR][1000 genomes]
rs28464242	1.00[EUR][1000 genomes]
rs28566664	1.00[EUR][1000 genomes]
rs3803455	1.00[YRI][hapmap]
rs41472450	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4774898	1.00[YRI][hapmap]
rs4774902	0.95[YRI][hapmap]
rs57421046	1.00[EUR][1000 genomes]
rs715338	1.00[YRI][hapmap]
rs7183392	0.95[YRI][hapmap]
rs7496293	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57212400-57222000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:57212400-57224800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:57212400-57224800	Weak transcription	Spleen	Spleen
4	chr15:57212400-57230400	Weak transcription	Lung	lung
5	chr15:57212400-57233400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:57212400-57256000	Weak transcription	Pancreas	Pancrea
7	chr15:57212600-57224000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr15:57212600-57241000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:57212800-57222200	Weak transcription	Left Ventricle	heart
10	chr15:57212800-57222200	Weak transcription	Psoas Muscle	Psoas
11	chr15:57212800-57222200	Weak transcription	Right Ventricle	heart
12	chr15:57212800-57222400	Weak transcription	Ovary	ovary
13	chr15:57212800-57224000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:57212800-57227200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr15:57213000-57222200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:57213000-57222400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr15:57213000-57227400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:57213200-57221200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:57213200-57223400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr15:57213200-57256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:57213400-57223200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:57213400-57226800	Weak transcription	Brain Germinal Matrix	brain
23	chr15:57214400-57223200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr15:57214800-57222200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:57215600-57221200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:57215600-57222600	Strong transcription	Primary B cells from cord blood	blood
27	chr15:57215600-57227400	Weak transcription	Fetal Brain Female	brain
28	chr15:57216000-57221200	Enhancers	Brain Hippocampus Middle	brain
29	chr15:57216000-57222000	Genic enhancers	Dnd41	blood
30	chr15:57216200-57221400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr15:57216400-57241800	Weak transcription	Fetal Brain Male	brain
32	chr15:57216600-57221600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr15:57217200-57221600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:57217200-57224000	Weak transcription	Stomach Mucosa	stomach
35	chr15:57217600-57221400	Enhancers	Brain Anterior Caudate	brain
36	chr15:57218200-57222000	Weak transcription	Placenta	Placenta
37	chr15:57218400-57221600	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr15:57218400-57222200	Weak transcription	Right Atrium	heart
39	chr15:57218400-57223200	Enhancers	Brain Angular Gyrus	brain
40	chr15:57218600-57222200	Weak transcription	Aorta	Aorta
41	chr15:57218600-57222600	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr15:57218600-57224800	Enhancers	Fetal Heart	heart
43	chr15:57218800-57221600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr15:57218800-57222200	Weak transcription	Gastric	stomach
45	chr15:57218800-57223200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr15:57218800-57224600	Enhancers	NHLF	lung
47	chr15:57219000-57221200	Weak transcription	Colon Smooth Muscle	Colon
48	chr15:57219000-57221400	Enhancers	Muscle Satellite Cultured Cells	--
49	chr15:57219000-57222000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:57219000-57222200	Weak transcription	H9 Cell Line	embryonic stem cell

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