Variant report

Variant	rs28566664
Chromosome Location	chr15:57109199-57109200
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57104304..57106504-chr15:57107525..57109423,2	MCF-7	breast:
2	chr15:57107595..57111663-chr15:57111716..57115001,4	K562	blood:
3	chr15:57106197..57110196-chr15:57111997..57118015,6	K562	blood:
4	chr15:57102473..57104641-chr15:57108016..57110704,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1647377	1.00[EUR][1000 genomes]
rs16953316	1.00[EUR][1000 genomes]
rs16977155	1.00[EUR][1000 genomes]
rs28421123	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28464242	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57421046	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57100200-57114000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:57100400-57111600	Weak transcription	Thymus	Thymus
3	chr15:57102200-57109200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:57102600-57109800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:57104600-57109200	Weak transcription	Aorta	Aorta
6	chr15:57104800-57110600	Enhancers	HUVEC	blood vessel
7	chr15:57105000-57114000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:57105000-57114200	Weak transcription	Ovary	ovary
9	chr15:57105400-57109800	Weak transcription	Fetal Heart	heart
10	chr15:57106600-57112400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:57106600-57113400	Weak transcription	Psoas Muscle	Psoas
12	chr15:57106600-57113800	Weak transcription	Brain Substantia Nigra	brain
13	chr15:57107000-57109200	Weak transcription	Fetal Stomach	stomach
14	chr15:57107400-57109200	Weak transcription	Fetal Thymus	thymus
15	chr15:57107400-57109600	Weak transcription	Small Intestine	intestine
16	chr15:57108000-57110200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:57108200-57109400	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr15:57108200-57110000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:57108200-57110000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr15:57108200-57110400	Enhancers	Brain Anterior Caudate	brain
21	chr15:57108200-57110800	Enhancers	Brain Germinal Matrix	brain
22	chr15:57108400-57109600	Enhancers	NH-A	brain
23	chr15:57108400-57110000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:57108400-57110000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:57108400-57110000	Enhancers	Adipose Nuclei	Adipose
26	chr15:57108400-57110000	Enhancers	Right Ventricle	heart
27	chr15:57108400-57110600	Enhancers	Osteobl	bone
28	chr15:57108800-57110400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:57109000-57109400	Enhancers	Brain Angular Gyrus	brain
30	chr15:57109000-57109400	Enhancers	Brain Hippocampus Middle	brain
31	chr15:57109000-57109400	Enhancers	Fetal Kidney	kidney
32	chr15:57109000-57109600	Enhancers	Hela-S3	cervix
33	chr15:57109000-57110000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:57109000-57110000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:57109000-57110000	Enhancers	Fetal Muscle Leg	muscle
36	chr15:57109000-57110000	Enhancers	Left Ventricle	heart
37	chr15:57109000-57110000	Enhancers	Right Atrium	heart
38	chr15:57109000-57110000	Enhancers	HSMMtube	muscle
39	chr15:57109000-57110000	Enhancers	NHLF	lung
40	chr15:57109000-57110200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:57109000-57110200	Enhancers	Stomach Smooth Muscle	stomach
42	chr15:57109000-57110400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:57109000-57110400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:57109000-57110400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:57109000-57110400	Enhancers	Muscle Satellite Cultured Cells	--
46	chr15:57109000-57110400	Enhancers	HMEC	breast
47	chr15:57109000-57110400	Enhancers	HSMM	muscle
48	chr15:57109000-57110600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:57109000-57110600	Enhancers	Fetal Brain Male	brain
50	chr15:57109000-57110600	Enhancers	Fetal Lung	lung

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