Variant report

Variant	rs28464242
Chromosome Location	chr15:57063177-57063178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1647377	1.00[EUR][1000 genomes]
rs16953316	1.00[EUR][1000 genomes]
rs16977155	1.00[EUR][1000 genomes]
rs28421123	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28566664	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57421046	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57053200-57065200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:57056800-57066400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr15:57057800-57064800	Weak transcription	HSMMtube	muscle
4	chr15:57057800-57065000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:57057800-57065000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:57057800-57065000	Weak transcription	Osteobl	bone
7	chr15:57058000-57065000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:57058000-57065000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:57058000-57065200	Weak transcription	Ovary	ovary
10	chr15:57058000-57066400	Weak transcription	Thymus	Thymus
11	chr15:57059800-57063400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr15:57059800-57065200	Weak transcription	K562	blood
13	chr15:57059800-57065200	Weak transcription	NH-A	brain
14	chr15:57062800-57064600	Weak transcription	HepG2	liver
15	chr15:57062800-57064800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:57062800-57065000	Weak transcription	Adipose Nuclei	Adipose
17	chr15:57062800-57065200	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links