Variant report
| Variant | rs213198 |
|---|---|
| Chromosome Location | chr6:33198771-33198772 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:33192685..33195675-chr6:33197310..33199443,2 | K562 | blood: | |
| 2 | chr6:33172952..33176323-chr6:33198481..33200466,3 | MCF-7 | breast: | |
| 3 | chr6:33198454..33201107-chr6:33238786..33241119,2 | MCF-7 | breast: | |
| 4 | chr6:33173001..33175712-chr6:33198390..33201223,2 | K562 | blood: | |
| 5 | chr6:33186449..33187999-chr6:33197735..33199524,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000204227 | Chromatin interaction |
| ENSG00000231500 | Chromatin interaction |
| ENSG00000199036 | Chromatin interaction |
| ENSG00000223501 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs2941555 | 1.00[ASN][1000 genomes] |
| rs3106196 | 1.00[ASN][1000 genomes] |
| rs3116713 | 1.00[ASN][1000 genomes] |
| rs3119026 | 1.00[ASN][1000 genomes] |
| rs3130013 | 1.00[ASN][1000 genomes] |
| rs3130023 | 1.00[ASN][1000 genomes] |
| rs3130026 | 1.00[ASN][1000 genomes] |
| rs3130104 | 1.00[ASN][1000 genomes] |
| rs3130257 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3130258 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3130273 | 1.00[ASN][1000 genomes] |
| rs35700288 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv462893 | chr6:33142539-33256471 | Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 104 gene(s) | inside rSNPs | diseases |
| 2 | nsv602830 | chr6:33142539-33256471 | Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 104 gene(s) | inside rSNPs | diseases |
| 3 | nsv830634 | chr6:33161217-33330745 | Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 139 gene(s) | inside rSNPs | diseases |
| 4 | nsv462894 | chr6:33174783-33254665 | Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 87 gene(s) | inside rSNPs | diseases |
| 5 | nsv602831 | chr6:33174783-33254665 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 87 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
