Variant report
| Variant | rs2941555 |
|---|---|
| Chromosome Location | chr6:33318978-33318979 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:33245675..33247612-chr6:33318040..33319699,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000235863 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs172435 | 0.92[EUR][1000 genomes] |
| rs1755038 | 1.00[ASN][1000 genomes] |
| rs1755040 | 1.00[ASN][1000 genomes] |
| rs1977139 | 0.95[EUR][1000 genomes] |
| rs210131 | 1.00[ASN][1000 genomes] |
| rs210153 | 1.00[ASN][1000 genomes] |
| rs210190 | 1.00[ASN][1000 genomes] |
| rs211472 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs213198 | 1.00[ASN][1000 genomes] |
| rs2747476 | 0.94[EUR][1000 genomes] |
| rs3106196 | 1.00[ASN][1000 genomes] |
| rs3116713 | 1.00[ASN][1000 genomes] |
| rs3119026 | 1.00[ASN][1000 genomes] |
| rs3130012 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs3130013 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3130023 | 1.00[ASN][1000 genomes] |
| rs3130026 | 1.00[ASN][1000 genomes] |
| rs3130104 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3130257 | 1.00[ASN][1000 genomes] |
| rs3130258 | 1.00[ASN][1000 genomes] |
| rs3130273 | 0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35700288 | 1.00[ASN][1000 genomes] |
| rs36003672 | 1.00[ASN][1000 genomes] |
| rs395832 | 0.89[EUR][1000 genomes] |
| rs406009 | 0.96[EUR][1000 genomes] |
| rs449978 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs4713634 | 1.00[ASN][1000 genomes] |
| rs6910721 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs7762843 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830634 | chr6:33161217-33330745 | Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 139 gene(s) | inside rSNPs | diseases |
| 2 | nsv830635 | chr6:33238005-33413787 | Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 129 gene(s) | inside rSNPs | diseases |
| 3 | nsv969386 | chr6:33297665-33325116 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:33313800-33322000 | Weak transcription | Primary T cells from cord blood | blood |
| 2 | chr6:33317800-33320000 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 3 | chr6:33317800-33323000 | Weak transcription | Stomach Mucosa | stomach |
