Variant report

Variant	rs449978
Chromosome Location	chr6:33496060-33496061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33385003..33387538-chr6:33494085..33496852,2	K562	blood:
2	chr6:33265668..33268001-chr6:33494684..33497652,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112514	Chromatin interaction
ENSG00000237441	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11963294	1.00[CHB][hapmap]
rs12529825	1.00[CHB][hapmap]
rs1755038	1.00[ASN][1000 genomes]
rs1755040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210131	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210153	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210190	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28800551	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2941555	1.00[ASN][1000 genomes]
rs3106196	1.00[ASN][1000 genomes]
rs3116713	1.00[ASN][1000 genomes]
rs3119019	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3119021	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3119022	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3119024	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3119025	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3119026	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3119027	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3130013	1.00[ASN][1000 genomes]
rs3130023	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130024	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3130026	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130032	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3130035	0.83[EUR][1000 genomes]
rs3130104	1.00[ASN][1000 genomes]
rs3130257	1.00[ASN][1000 genomes]
rs3130258	1.00[ASN][1000 genomes]
rs3130273	1.00[ASN][1000 genomes]
rs34416888	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35432298	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35700288	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35796955	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35817932	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36003672	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413722	0.81[AMR][1000 genomes]
rs421328	0.84[AMR][1000 genomes]
rs4713634	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498066	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs630792	1.00[CHB][hapmap]
rs663169	1.00[CHB][hapmap]
rs6910721	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs761582	0.88[AMR][1000 genomes]
rs7762843	0.91[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv524010	chr6:33468151-33505981	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33494600-33497400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links