Variant report

Variant	rs3119021
Chromosome Location	chr6:33429952-33429953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33424166..33426973-chr6:33429815..33431845,2	K562	blood:
2	chr6:33399216..33401242-chr6:33429198..33431670,2	K562	blood:
3	chr6:33425473..33427450-chr6:33429815..33431643,2	K562	blood:
4	chr6:33425270..33426950-chr6:33428718..33430571,2	MCF-7	breast:
5	chr6:33423454..33426241-chr6:33429192..33432961,4	MCF-7	breast:
6	chr6:33422110..33424374-chr6:33429832..33431514,2	K562	blood:

Variant related genes	Relation type
ENSG00000197283	Chromatin interaction
ENSG00000213588	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12529825	1.00[CHB][hapmap]
rs1755040	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1977139	0.83[AMR][1000 genomes]
rs210131	0.91[EUR][1000 genomes]
rs210153	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs210190	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2747476	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28800551	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3119019	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3119022	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3119024	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3119025	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3119026	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3119027	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130023	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3130024	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3130026	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3130032	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130035	0.95[EUR][1000 genomes]
rs34416888	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35432298	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35700288	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35796955	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35817932	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36003672	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs406009	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs413722	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs421328	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs449978	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4713634	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs498066	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910721	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap]
rs761582	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762843	0.91[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33423400-33430800	Weak transcription	Gastric	stomach
2	chr6:33424200-33431200	Weak transcription	HepG2	liver
3	chr6:33424200-33439200	Weak transcription	Pancreas	Pancrea
4	chr6:33424600-33433800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:33424600-33434400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:33425600-33434400	Weak transcription	Duodenum Mucosa	Duodenum

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