Variant report

Variant	rs3119025
Chromosome Location	chr6:33422976-33422977
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33381847..33384907-chr6:33420236..33423106,3	MCF-7	breast:
2	chr6:33422362..33424306-chr6:33561012..33562772,2	K562	blood:
3	chr6:33238561..33240428-chr6:33421904..33423704,2	K562	blood:
4	chr6:33385453..33389637-chr6:33419628..33424957,5	MCF-7	breast:
5	chr6:33377039..33379614-chr6:33421781..33424452,2	K562	blood:
6	chr6:33376983..33379283-chr6:33422704..33424364,2	MCF-7	breast:
7	chr6:33392449..33400629-chr6:33419013..33424035,12	MCF-7	breast:
8	chr6:33384548..33387250-chr6:33422114..33424496,2	K562	blood:
9	chr6:33395899..33401993-chr6:33420102..33423796,11	MCF-7	breast:
10	chr6:33245204..33246812-chr6:33420469..33423462,2	MCF-7	breast:
11	chr6:33406190..33414491-chr6:33419287..33424467,10	MCF-7	breast:
12	chr6:33264374..33267492-chr6:33422246..33424652,3	K562	blood:
13	chr6:33398677..33403495-chr6:33419995..33423723,6	K562	blood:
14	chr6:33358950..33361251-chr6:33421997..33423819,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000237649	Chromatin interaction
ENSG00000112511	Chromatin interaction
ENSG00000235863	Chromatin interaction
ENSG00000231500	Chromatin interaction
ENSG00000112514	Chromatin interaction
ENSG00000223501	Chromatin interaction
ENSG00000237441	Chromatin interaction
ENSG00000197283	Chromatin interaction
ENSG00000197251	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12529825	1.00[CHB][hapmap]
rs1755040	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1977139	0.83[AMR][1000 genomes]
rs210131	0.91[EUR][1000 genomes]
rs210153	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs210190	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2747476	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28800551	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3119019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3119021	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3119022	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3119024	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3119026	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3119027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130023	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3130024	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3130026	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3130032	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130035	0.95[EUR][1000 genomes]
rs34416888	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35432298	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35700288	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35796955	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35817932	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36003672	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs406009	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs413722	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs421328	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs449978	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4713634	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs498066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910721	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap]
rs761582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762843	0.91[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3507170	chr6:33418124-33423322	Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
4	esv3507171	chr6:33418124-33423322	Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33421200-33423000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:33421200-33423000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:33421200-33423000	Active TSS	Muscle Satellite Cultured Cells	--
4	chr6:33421200-33423200	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr6:33421400-33423000	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:33421400-33423000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:33421400-33423000	Active TSS	Fetal Intestine Large	intestine
8	chr6:33421400-33423200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:33421400-33423200	Active TSS	H9 Cell Line	embryonic stem cell
10	chr6:33421400-33423200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:33421400-33423200	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr6:33421400-33423200	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr6:33421400-33423200	Active TSS	Fetal Kidney	kidney
14	chr6:33421400-33423200	Active TSS	A549	lung
15	chr6:33421400-33423400	Active TSS	NHDF-Ad	bronchial
16	chr6:33421600-33423000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:33421600-33423000	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:33421600-33423000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:33421600-33423000	Active TSS	Fetal Intestine Small	intestine
20	chr6:33421600-33423200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:33421600-33423200	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr6:33421600-33423200	Active TSS	Psoas Muscle	Psoas
23	chr6:33421600-33423400	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr6:33421800-33423000	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr6:33421800-33423000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:33421800-33423000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:33421800-33423000	Active TSS	K562	blood
28	chr6:33421800-33423200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:33422000-33423000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:33422000-33423000	Transcr. at gene 5' and 3'	Right Atrium	heart
31	chr6:33422000-33423200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:33422400-33423000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr6:33422400-33423200	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr6:33422400-33423200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr6:33422400-33423200	Transcr. at gene 5' and 3'	Thymus	Thymus
36	chr6:33422400-33423400	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr6:33422400-33423400	Flanking Active TSS	Stomach Smooth Muscle	stomach
38	chr6:33422600-33423000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:33422600-33423000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
40	chr6:33422600-33423000	Flanking Active TSS	Primary B cells from peripheral blood	blood
41	chr6:33422600-33423000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr6:33422600-33423000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
43	chr6:33422600-33423000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr6:33422600-33423000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:33422600-33423000	Flanking Active TSS	Brain Substantia Nigra	brain
46	chr6:33422600-33423000	Flanking Active TSS	Placenta	Placenta
47	chr6:33422600-33423000	Flanking Active TSS	Fetal Thymus	thymus
48	chr6:33422600-33423000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr6:33422600-33423000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr6:33422600-33423200	Flanking Active TSS	Primary B cells from cord blood	blood

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