Variant report

Variant	rs36003672
Chromosome Location	chr6:33457816-33457817
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33447179..33448941-chr6:33457441..33459924,2	MCF-7	breast:
2	chr6:33420752..33423380-chr6:33456463..33458744,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213588	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1755038	1.00[ASN][1000 genomes]
rs1755040	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210131	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210153	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28800551	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2941555	1.00[ASN][1000 genomes]
rs3106196	1.00[ASN][1000 genomes]
rs3116713	1.00[ASN][1000 genomes]
rs3119019	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3119021	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3119022	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3119024	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3119025	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3119026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3119027	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3130013	1.00[ASN][1000 genomes]
rs3130023	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130024	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3130026	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130032	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3130035	0.85[EUR][1000 genomes]
rs3130104	1.00[ASN][1000 genomes]
rs3130257	1.00[ASN][1000 genomes]
rs3130258	1.00[ASN][1000 genomes]
rs3130273	1.00[ASN][1000 genomes]
rs34416888	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35432298	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35700288	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35796955	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35817932	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs413722	0.85[AMR][1000 genomes]
rs421328	0.88[AMR][1000 genomes]
rs449978	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713634	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498066	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6910721	1.00[ASN][1000 genomes]
rs761582	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33453000-33474000	Weak transcription	Right Atrium	heart
2	chr6:33453400-33458200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:33453400-33458200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:33456400-33458200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:33456600-33458000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:33456600-33459000	Enhancers	K562	blood

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