Variant report

Variant	rs3130035
Chromosome Location	chr6:33430950-33430951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs172435	1.00[ASN][1000 genomes]
rs1755040	0.83[EUR][1000 genomes]
rs210131	0.86[EUR][1000 genomes]
rs210153	0.83[EUR][1000 genomes]
rs210190	0.85[EUR][1000 genomes]
rs28800551	0.88[EUR][1000 genomes]
rs3119019	0.88[EUR][1000 genomes]
rs3119021	0.95[EUR][1000 genomes]
rs3119022	0.91[EUR][1000 genomes]
rs3119024	0.95[EUR][1000 genomes]
rs3119025	0.95[EUR][1000 genomes]
rs3119026	0.95[EUR][1000 genomes]
rs3119027	0.88[EUR][1000 genomes]
rs3130023	0.88[EUR][1000 genomes]
rs3130024	0.95[EUR][1000 genomes]
rs3130026	0.87[EUR][1000 genomes]
rs3130032	0.95[EUR][1000 genomes]
rs34416888	0.85[EUR][1000 genomes]
rs35432298	0.88[EUR][1000 genomes]
rs35700288	0.91[EUR][1000 genomes]
rs35796955	0.88[EUR][1000 genomes]
rs35817932	0.88[EUR][1000 genomes]
rs36003672	0.85[EUR][1000 genomes]
rs413722	0.85[EUR][1000 genomes]
rs421328	0.85[EUR][1000 genomes]
rs449978	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs4713634	0.86[EUR][1000 genomes]
rs498066	0.88[EUR][1000 genomes]
rs61163286	0.83[AFR][1000 genomes]
rs6910721	1.00[CHD][hapmap]
rs761582	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33424200-33431200	Weak transcription	HepG2	liver
2	chr6:33424200-33439200	Weak transcription	Pancreas	Pancrea
3	chr6:33424600-33433800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:33424600-33434400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:33425600-33434400	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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