Variant report

Variant	rs34416888
Chromosome Location	chr6:33453052-33453053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1755040	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs210131	0.88[EUR][1000 genomes]
rs210153	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs210190	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28800551	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3119019	0.84[AMR][1000 genomes]
rs3119021	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3119022	0.80[AMR][1000 genomes]
rs3119024	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3119025	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3119026	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3119027	0.84[AMR][1000 genomes]
rs3130023	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3130024	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130026	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3130032	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3130035	0.85[EUR][1000 genomes]
rs35432298	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35700288	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35796955	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35817932	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36003672	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs421328	0.80[AMR][1000 genomes]
rs449978	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4713634	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs498066	0.84[AMR][1000 genomes]
rs761582	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33449200-33454400	Weak transcription	K562	blood
2	chr6:33452800-33453200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:33453000-33474000	Weak transcription	Right Atrium	heart

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