Variant report

Variant	rs663169
Chromosome Location	chr6:33684963-33684964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33684071..33687779-chr6:33863332..33865982,3	MCF-7	breast:
2	chr6:33682630..33685096-chr6:33696918..33698480,2	K562	blood:
3	chr6:33684529..33686540-chr6:33729478..33731636,2	MCF-7	breast:
4	chr6:33680227..33683145-chr6:33684696..33687420,2	K562	blood:
5	chr6:33674250..33675922-chr6:33684521..33687700,3	K562	blood:
6	chr6:33683155..33686367-chr6:33732476..33736646,4	MCF-7	breast:
7	chr6:33677771..33685795-chr6:33753004..33758704,10	MCF-7	breast:
8	chr6:33676188..33679535-chr6:33684532..33687209,3	MCF-7	breast:
9	chr6:33683624..33685957-chr6:34119355..34121276,2	MCF-7	breast:
10	chr6:33683560..33685755-chr6:33736435..33739209,2	MCF-7	breast:
11	chr6:33684753..33687394-chr6:33728535..33731247,2	MCF-7	breast:
12	chr6:33680227..33683293-chr6:33684221..33688907,5	K562	blood:
13	chr6:33684724..33685608-chr6:33698489..33699120,3	MCF-7	breast:
14	chr6:33684880..33685463-chr6:33699620..33700206,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137288	Chromatin interaction
ENSG00000249346	Chromatin interaction
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11963294	1.00[CHB][hapmap]
rs12529825	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs210131	1.00[ASN][1000 genomes]
rs210153	1.00[ASN][1000 genomes]
rs449978	1.00[CHB][hapmap]
rs4713634	1.00[ASN][1000 genomes]
rs471942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630792	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33679800-33685000	Weak transcription	Lung	lung
2	chr6:33679800-33685600	Weak transcription	Placenta	Placenta
3	chr6:33680000-33685000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:33680000-33685000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:33680000-33685000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:33680000-33685000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:33680000-33685000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:33680000-33685000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:33680000-33685200	Weak transcription	Right Atrium	heart
10	chr6:33680000-33686000	Weak transcription	Right Ventricle	heart
11	chr6:33680000-33689400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:33680000-33690000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:33680000-33690200	Weak transcription	Psoas Muscle	Psoas
14	chr6:33680000-33693000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:33680000-33695200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:33680000-33695800	Weak transcription	Spleen	Spleen
17	chr6:33680000-33696200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:33680000-33698400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:33680000-33705000	Weak transcription	Brain Angular Gyrus	brain
20	chr6:33680200-33685200	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:33681600-33685800	Enhancers	HepG2	liver
22	chr6:33681800-33689200	Enhancers	Pancreas	Pancrea
23	chr6:33682600-33686200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:33683000-33686600	Enhancers	Stomach Mucosa	stomach
25	chr6:33683200-33686000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:33683200-33686200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:33683800-33685400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:33684000-33685200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:33684000-33685400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:33684000-33686200	Enhancers	Liver	Liver
31	chr6:33684000-33686200	Enhancers	NHEK	skin
32	chr6:33684000-33686600	Enhancers	Left Ventricle	heart
33	chr6:33684000-33687000	Enhancers	HMEC	breast
34	chr6:33684200-33685200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr6:33684200-33685600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr6:33684200-33686000	Weak transcription	Fetal Brain Female	brain
37	chr6:33684200-33687400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:33684200-33688200	Enhancers	Fetal Lung	lung
39	chr6:33684400-33685200	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr6:33684400-33685200	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr6:33684400-33685200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:33684400-33688000	Weak transcription	Gastric	stomach
43	chr6:33684600-33685000	Weak transcription	Esophagus	oesophagus
44	chr6:33684600-33685000	Enhancers	Fetal Kidney	kidney
45	chr6:33684600-33688200	Enhancers	Fetal Brain Male	brain
46	chr6:33684600-33688600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr6:33684800-33685000	Enhancers	H9 Cell Line	embryonic stem cell
48	chr6:33684800-33685200	Enhancers	GM12878-XiMat	blood
49	chr6:33684800-33685800	Enhancers	NHLF	lung
50	chr6:33684800-33686400	Enhancers	Colon Smooth Muscle	Colon

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