Variant report

Variant	rs213550
Chromosome Location	chr2:234784246-234784247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:234784096..234785745-chr2:234791587..234793695,2	MCF-7	breast:
2	chr2:234783189..234785802-chr2:234814089..234815780,2	K562	blood:
3	chr2:234774817..234777725-chr2:234781987..234784412,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224287	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11562979	0.94[ASN][1000 genomes]
rs11563228	0.97[ASN][1000 genomes]
rs13390819	0.97[ASN][1000 genomes]
rs13398248	0.90[ASN][1000 genomes]
rs13403318	0.97[ASN][1000 genomes]
rs13406453	0.97[ASN][1000 genomes]
rs13406457	0.93[ASN][1000 genomes]
rs13410024	0.97[ASN][1000 genomes]
rs13410032	0.97[ASN][1000 genomes]
rs17862907	0.97[ASN][1000 genomes]
rs17862921	0.90[ASN][1000 genomes]
rs17863825	0.97[ASN][1000 genomes]
rs17863826	0.97[ASN][1000 genomes]
rs17863838	0.93[ASN][1000 genomes]
rs17864729	0.97[ASN][1000 genomes]
rs17864735	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17864737	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17868368	0.97[ASN][1000 genomes]
rs17868369	0.90[ASN][1000 genomes]
rs186159	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs188492	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213543	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213544	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173746	0.97[ASN][1000 genomes]
rs2173747	0.97[ASN][1000 genomes]
rs2530796	0.97[ASN][1000 genomes]
rs2650888	0.97[ASN][1000 genomes]
rs494812	0.97[ASN][1000 genomes]
rs498680	0.97[ASN][1000 genomes]
rs498696	0.97[ASN][1000 genomes]
rs498786	0.90[ASN][1000 genomes]
rs498790	0.90[ASN][1000 genomes]
rs499703	0.97[ASN][1000 genomes]
rs501650	0.97[ASN][1000 genomes]
rs502321	0.97[ASN][1000 genomes]
rs506632	0.97[ASN][1000 genomes]
rs511387	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs531771	0.97[ASN][1000 genomes]
rs566985	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568906	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs570800	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs575194	0.97[ASN][1000 genomes]
rs577734	0.97[ASN][1000 genomes]
rs577782	0.97[ASN][1000 genomes]
rs577820	0.97[ASN][1000 genomes]
rs579327	0.97[ASN][1000 genomes]
rs581377	0.97[ASN][1000 genomes]
rs596509	0.97[ASN][1000 genomes]
rs598759	0.90[ASN][1000 genomes]
rs598760	0.90[ASN][1000 genomes]
rs611131	0.97[ASN][1000 genomes]
rs611169	0.97[ASN][1000 genomes]
rs611563	0.97[ASN][1000 genomes]
rs622954	0.93[ASN][1000 genomes]
rs625151	0.97[ASN][1000 genomes]
rs628138	0.97[ASN][1000 genomes]
rs657658	0.97[ASN][1000 genomes]
rs658054	0.97[ASN][1000 genomes]
rs658607	0.97[ASN][1000 genomes]
rs672831	0.97[ASN][1000 genomes]
rs6741751	0.93[ASN][1000 genomes]
rs685139	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs686003	0.90[ASN][1000 genomes]
rs686007	0.90[ASN][1000 genomes]
rs688677	0.97[ASN][1000 genomes]
rs9646718	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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