Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:234798124..234800456-chr2:234800797..234805353,4	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10173569	0.91[JPT][hapmap]
rs11563231	0.91[JPT][hapmap]
rs13384575	0.90[JPT][hapmap]
rs13417465	0.91[JPT][hapmap]
rs17864737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186159	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs188492	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs213541	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213543	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs213544	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs213550	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28946905	0.91[AFR][1000 genomes]
rs473504	0.91[JPT][hapmap]
rs511387	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs522389	0.81[JPT][hapmap]
rs529963	0.90[JPT][hapmap]
rs566529	0.90[JPT][hapmap]
rs566985	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs568906	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs570800	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs606397	0.81[JPT][hapmap]
rs619351	0.81[JPT][hapmap]
rs685139	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs693637	0.91[JPT][hapmap]
rs765900	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234800800-234802200	Enhancers	HSMMtube	muscle
2	chr2:234801200-234801800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr2:234801200-234802000	Enhancers	HSMM	muscle

Quick Search: