Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11563217	0.90[GIH][hapmap]
rs11563220	0.90[GIH][hapmap]
rs17862920	0.87[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs17862921	1.00[MEX][hapmap];0.83[TSI][hapmap]
rs17864735	0.91[AFR][1000 genomes]
rs17864737	0.91[AFR][1000 genomes]
rs17864741	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs186159	1.00[CEU][hapmap]
rs188492	1.00[CEU][hapmap]
rs213541	1.00[CEU][hapmap]
rs213543	1.00[CEU][hapmap]
rs213544	1.00[CEU][hapmap]
rs28946905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511387	1.00[CEU][hapmap]
rs566985	1.00[CEU][hapmap]
rs568906	1.00[CEU][hapmap]
rs570800	1.00[CEU][hapmap]
rs6717978	0.98[ASN][1000 genomes]
rs6717992	0.98[ASN][1000 genomes]
rs685139	1.00[CEU][hapmap]
rs7564831	0.90[GIH][hapmap]
rs7577262	0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234806800-234807600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:234806800-234807800	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr2:234806800-234807800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr2:234806800-234807800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr2:234806800-234808000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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