Variant report

Variant	rs28946905
Chromosome Location	chr2:234807749-234807750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17864735	0.91[AFR][1000 genomes]
rs17864737	0.91[AFR][1000 genomes]
rs17864741	0.96[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs186159	1.00[CEU][hapmap]
rs188492	1.00[CEU][hapmap]
rs213541	1.00[CEU][hapmap]
rs213543	1.00[CEU][hapmap]
rs213544	1.00[CEU][hapmap]
rs511387	1.00[CEU][hapmap]
rs566985	1.00[CEU][hapmap]
rs568906	1.00[CEU][hapmap]
rs570800	1.00[CEU][hapmap]
rs6717978	0.98[ASN][1000 genomes]
rs6717992	0.98[ASN][1000 genomes]
rs685139	1.00[CEU][hapmap]
rs7577262	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs765900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234806800-234807800	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr2:234806800-234807800	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr2:234806800-234807800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr2:234806800-234808000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr2:234807200-234807800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr2:234807200-234808000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr2:234807400-234807800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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