Variant report

Variant	rs2136134
Chromosome Location	chr6:54158165-54158166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10085239	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12191165	0.90[AMR][1000 genomes]
rs12204972	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12213363	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12215705	0.82[EUR][1000 genomes]
rs1340660	0.90[AMR][1000 genomes]
rs2202801	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2211241	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2297982	0.86[ASN][1000 genomes]
rs3777660	0.86[ASN][1000 genomes]
rs57447968	0.93[ASN][1000 genomes]
rs58128009	0.89[ASN][1000 genomes]
rs59348077	0.97[ASN][1000 genomes]
rs61106945	0.93[ASN][1000 genomes]
rs9464051	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464052	0.86[ASN][1000 genomes]
rs9474797	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54153800-54160000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:54156000-54158400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:54156200-54159800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:54156800-54158800	Weak transcription	NH-A	brain
5	chr6:54157000-54158800	Weak transcription	Osteobl	bone
6	chr6:54157000-54159000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:54157200-54164000	Weak transcription	NHDF-Ad	bronchial
8	chr6:54157600-54158600	Weak transcription	HMEC	breast
9	chr6:54157600-54158600	Weak transcription	HUVEC	blood vessel
10	chr6:54157600-54162200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:54157600-54164000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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