Variant report

Variant	rs59348077
Chromosome Location	chr6:54155670-54155671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10085239	0.93[ASN][1000 genomes]
rs10484646	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12204972	0.92[ASN][1000 genomes]
rs12213363	0.89[ASN][1000 genomes]
rs2136134	0.97[ASN][1000 genomes]
rs2202801	0.92[ASN][1000 genomes]
rs2211241	0.93[ASN][1000 genomes]
rs2297982	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777660	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57447968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58128009	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61106945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9464051	0.92[ASN][1000 genomes]
rs9464052	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9474797	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54151400-54155800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:54151400-54155800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:54151400-54156000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:54152600-54157400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:54152800-54156000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:54153200-54157600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:54153800-54160000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:54154400-54155800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:54154400-54156000	Enhancers	HMEC	breast
10	chr6:54154600-54155800	Enhancers	NHEK	skin
11	chr6:54154800-54157600	Enhancers	HUVEC	blood vessel
12	chr6:54154800-54157800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:54155000-54156000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:54155400-54155800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:54155400-54156200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:54155400-54156800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:54155400-54156800	Enhancers	HSMM	muscle
18	chr6:54155400-54156800	Enhancers	HSMMtube	muscle
19	chr6:54155400-54156800	Enhancers	NH-A	brain
20	chr6:54155400-54157000	Enhancers	NHLF	lung
21	chr6:54155400-54157200	Enhancers	NHDF-Ad	bronchial
22	chr6:54155400-54157400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:54155600-54157000	Enhancers	Osteobl	bone

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