Variant report

Variant	rs2136619
Chromosome Location	chr18:45084392-45084393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10163593	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10164071	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1510005	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8084519	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8090128	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8092886	0.93[ASW][hapmap]
rs870304	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9962190	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2136619	CTIF	cis	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45081800-45084400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:45083600-45085200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr18:45083800-45085200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr18:45083800-45085400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr18:45084000-45085000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr18:45084200-45084600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr18:45084200-45084800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr18:45084200-45084800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr18:45084200-45085000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr18:45084200-45085000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr18:45084200-45085000	Enhancers	Dnd41	blood
12	chr18:45084200-45085200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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