Variant report

Variant	rs8090128
Chromosome Location	chr18:45093277-45093278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10163593	0.87[ASN][1000 genomes]
rs10164071	0.87[ASN][1000 genomes]
rs1510005	0.87[ASN][1000 genomes]
rs2136619	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8084519	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs870304	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9962190	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3317742	chr18:45092079-45093413	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3317743	chr18:45092150-45093325	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45089800-45094000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr18:45090200-45103000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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