Variant report

Variant	rs2136690
Chromosome Location	chr3:156363242-156363243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10428096	0.82[AFR][1000 genomes]
rs10454220	0.83[AFR][1000 genomes]
rs12485328	0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs12488285	0.85[ASN][1000 genomes]
rs13073442	0.88[ASN][1000 genomes]
rs13092225	0.91[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs1510279	0.82[ASN][1000 genomes]
rs1510280	0.81[ASN][1000 genomes]
rs28493995	0.82[ASN][1000 genomes]
rs7617108	0.83[CHD][hapmap];0.95[GIH][hapmap]
rs9835981	0.81[ASN][1000 genomes]
rs985855	0.91[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs985856	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2136690	GMPS	cis	cerebellum	SCAN
rs2136690	BRD7	cis	cerebellum	SCAN
rs2136690	LEKR1	cis	parietal	SCAN
rs2136690	CCNL1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156355800-156367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:156360000-156376600	Weak transcription	Psoas Muscle	Psoas
3	chr3:156360400-156363600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:156361600-156366000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:156361800-156365600	Weak transcription	HSMMtube	muscle
6	chr3:156362200-156363400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:156362200-156365600	Weak transcription	Osteobl	bone
8	chr3:156362200-156367600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr3:156362400-156363800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:156362800-156363400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:156362800-156367600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr3:156362800-156367600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:156363200-156363400	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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