Variant report

Variant	rs9835981
Chromosome Location	chr3:156367414-156367415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156356830..156359467-chr3:156364600..156367515,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-7	chr3:156359231-156383752	predAs_chen_BG181400_1

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12485328	0.87[ASN][1000 genomes]
rs12488285	0.96[ASN][1000 genomes]
rs13073442	0.91[ASN][1000 genomes]
rs13092225	0.93[ASN][1000 genomes]
rs1397192	0.84[AMR][1000 genomes]
rs1510276	0.84[ASN][1000 genomes]
rs1510279	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1510280	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1850721	0.84[ASN][1000 genomes]
rs1976598	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2136690	0.81[ASN][1000 genomes]
rs28493995	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4679782	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6441090	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6441091	0.84[ASN][1000 genomes]
rs66808167	0.86[AMR][1000 genomes]
rs67423646	0.86[AMR][1000 genomes]
rs6766154	0.84[ASN][1000 genomes]
rs6772236	0.84[ASN][1000 genomes]
rs6778962	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6787101	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6790457	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6807248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6807894	0.84[ASN][1000 genomes]
rs73168612	0.82[AMR][1000 genomes]
rs73168615	0.84[AMR][1000 genomes]
rs7617108	0.84[ASN][1000 genomes]
rs7628802	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7638768	0.84[ASN][1000 genomes]
rs7639306	0.84[ASN][1000 genomes]
rs9815389	0.81[ASN][1000 genomes]
rs9852504	0.84[ASN][1000 genomes]
rs985855	0.91[ASN][1000 genomes]
rs985856	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156355800-156367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:156360000-156376600	Weak transcription	Psoas Muscle	Psoas
3	chr3:156362200-156367600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr3:156362800-156367600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:156362800-156367600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:156367400-156368000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:156367400-156368400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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