Variant report

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156355072..156357150-chr3:156390850..156394545,3	MCF-7	breast:
2	chr3:156355246..156356229-chr3:156530151..156531163,7	MCF-7	breast:
3	chr3:156259833..156260828-chr3:156355203..156356175,21	MCF-7	breast:
4	chr3:156355218..156355945-chr3:156391541..156392481,3	MCF-7	breast:
5	chr3:156259847..156260725-chr3:156355203..156356175,11	MCF-7	breast:
6	chr3:156346980..156348606-chr3:156355155..156357044,2	K562	blood:
7	chr3:156355205..156356010-chr3:156391504..156392460,5	MCF-7	breast:
8	chr3:156336566..156339046-chr3:156355636..156358467,3	K562	blood:
9	chr3:156355156..156356223-chr3:156530151..156531163,9	MCF-7	breast:
10	chr3:156260069..156260789-chr3:156355314..156356125,5	MCF-7	breast:
11	chr3:156355205..156356148-chr3:156391504..156392555,10	MCF-7	breast:
12	chr3:156346319..156347875-chr3:156354876..156356759,2	MCF-7	breast:
13	chr3:156355498..156356029-chr3:156530091..156530958,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1397192	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1510279	0.86[AMR][1000 genomes]
rs1510280	0.86[AMR][1000 genomes]
rs16826679	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1976598	0.86[AMR][1000 genomes]
rs28493995	0.86[AMR][1000 genomes]
rs4679782	0.86[AMR][1000 genomes]
rs4680294	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680295	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6441090	0.86[AMR][1000 genomes]
rs66808167	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6778962	0.86[AMR][1000 genomes]
rs6787101	0.81[AMR][1000 genomes]
rs6790457	0.86[AMR][1000 genomes]
rs6807248	0.86[AMR][1000 genomes]
rs73168612	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73168615	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7628802	0.86[AMR][1000 genomes]
rs9835981	0.86[AMR][1000 genomes]
rs985856	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156348800-156360600	Weak transcription	Right Atrium	heart
2	chr3:156349400-156361000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:156351800-156356600	Weak transcription	Osteobl	bone
4	chr3:156351800-156361000	Weak transcription	Fetal Stomach	stomach
5	chr3:156353200-156358800	Weak transcription	GM12878-XiMat	blood
6	chr3:156353800-156355800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:156354200-156355800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:156354400-156357000	Weak transcription	K562	blood
9	chr3:156354400-156359000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:156355000-156355800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr3:156355200-156356000	Enhancers	NHEK	skin
12	chr3:156355200-156356200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr3:156355400-156355800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:156355400-156356200	Enhancers	Colonic Mucosa	Colon
15	chr3:156355600-156356200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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