Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:156254209..156257185-chr3:156353690..156355204,2	K562	blood:
2	chr3:156351719..156355141-chr3:156359193..156362259,3	K562	blood:
3	chr3:156322092..156324579-chr3:156349375..156354165,4	K562	blood:
4	chr3:156347156..156349827-chr3:156350754..156354562,3	K562	blood:
5	chr3:156351082..156355136-chr3:156390629..156393709,3	K562	blood:

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1397192	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510279	0.82[AMR][1000 genomes]
rs1510280	0.82[AMR][1000 genomes]
rs168244	1.00[ASN][1000 genomes]
rs16826679	0.91[EUR][1000 genomes]
rs17380185	1.00[ASN][1000 genomes]
rs1976598	0.82[AMR][1000 genomes]
rs28493995	0.82[AMR][1000 genomes]
rs344031	1.00[ASN][1000 genomes]
rs364580	1.00[ASN][1000 genomes]
rs391833	1.00[ASN][1000 genomes]
rs436741	1.00[ASN][1000 genomes]
rs4679782	0.82[AMR][1000 genomes]
rs4680294	0.89[EUR][1000 genomes]
rs4680295	0.89[EUR][1000 genomes]
rs6441090	0.82[AMR][1000 genomes]
rs66808167	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67423646	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6778962	0.82[AMR][1000 genomes]
rs6790457	0.82[AMR][1000 genomes]
rs6797082	1.00[ASN][1000 genomes]
rs6807248	0.82[AMR][1000 genomes]
rs73168615	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628802	0.82[AMR][1000 genomes]
rs816546	1.00[ASN][1000 genomes]
rs9647348	1.00[ASN][1000 genomes]
rs9835981	0.82[AMR][1000 genomes]
rs985856	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156348800-156360600	Weak transcription	Right Atrium	heart
2	chr3:156349400-156361000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:156349600-156354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:156349600-156355200	Weak transcription	NHEK	skin
5	chr3:156350200-156354400	Enhancers	K562	blood
6	chr3:156351800-156356600	Weak transcription	Osteobl	bone
7	chr3:156351800-156361000	Weak transcription	Fetal Stomach	stomach
8	chr3:156353200-156358800	Weak transcription	GM12878-XiMat	blood
9	chr3:156353400-156354200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:156353400-156354600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:156353600-156354200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr3:156353600-156354400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:156353600-156354400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:156353800-156354200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:156353800-156354400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr3:156353800-156355800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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