Variant report

Variant	rs66808167
Chromosome Location	chr3:156360857-156360858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156360582..156362338-chr3:156391231..156393089,2	K562	blood:
2	chr3:156351719..156355141-chr3:156359193..156362259,3	K562	blood:
3	chr3:156360827..156364304-chr3:156391072..156393975,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-7	chr3:156359231-156383752	predAs_chen_BG181400_1

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1397192	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1510279	0.86[AMR][1000 genomes]
rs1510280	0.86[AMR][1000 genomes]
rs16826679	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1976598	0.86[AMR][1000 genomes]
rs28493995	0.86[AMR][1000 genomes]
rs4679782	0.86[AMR][1000 genomes]
rs4680294	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4680295	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441090	0.86[AMR][1000 genomes]
rs67423646	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6778962	0.86[AMR][1000 genomes]
rs6787101	0.81[AMR][1000 genomes]
rs6790457	0.86[AMR][1000 genomes]
rs6807248	0.86[AMR][1000 genomes]
rs73168612	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73168615	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7628802	0.86[AMR][1000 genomes]
rs9835981	0.86[AMR][1000 genomes]
rs985856	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156349400-156361000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:156351800-156361000	Weak transcription	Fetal Stomach	stomach
3	chr3:156355800-156367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:156356200-156361200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:156356200-156361600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:156358800-156361200	Enhancers	GM12878-XiMat	blood
7	chr3:156359000-156361400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr3:156359000-156362000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr3:156359600-156361000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:156360000-156361200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:156360000-156361600	Enhancers	Primary hematopoietic stem cells	blood
12	chr3:156360000-156376600	Weak transcription	Psoas Muscle	Psoas
13	chr3:156360200-156362200	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr3:156360400-156361000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:156360400-156361000	Enhancers	Brain Cingulate Gyrus	brain
16	chr3:156360400-156361200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr3:156360400-156362000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr3:156360400-156362000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr3:156360400-156362000	Enhancers	Fetal Brain Male	brain
20	chr3:156360400-156362200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr3:156360400-156362200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr3:156360400-156362200	Enhancers	Fetal Heart	heart
23	chr3:156360400-156362600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:156360400-156363600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:156360600-156361000	Enhancers	Brain Hippocampus Middle	brain
26	chr3:156360600-156361200	Enhancers	Brain Anterior Caudate	brain
27	chr3:156360600-156361200	Enhancers	K562	blood
28	chr3:156360600-156361200	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr3:156360600-156361200	Enhancers	Osteobl	bone
30	chr3:156360600-156361400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:156360600-156361400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:156360600-156361400	Enhancers	Spleen	Spleen
33	chr3:156360600-156361600	Enhancers	H1 Cell Line	embryonic stem cell
34	chr3:156360600-156361600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:156360600-156361600	Enhancers	Brain Angular Gyrus	brain
36	chr3:156360600-156361600	Enhancers	Fetal Kidney	kidney
37	chr3:156360600-156361800	Enhancers	H9 Cell Line	embryonic stem cell
38	chr3:156360600-156361800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:156360600-156361800	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr3:156360600-156361800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:156360600-156361800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:156360600-156361800	Enhancers	Adipose Nuclei	Adipose
43	chr3:156360600-156361800	Enhancers	Brain Substantia Nigra	brain
44	chr3:156360600-156362000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr3:156360600-156362000	Enhancers	Right Atrium	heart
46	chr3:156360600-156362000	Enhancers	NHDF-Ad	bronchial
47	chr3:156360600-156362200	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr3:156360600-156362200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr3:156360600-156362200	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr3:156360600-156362200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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