Variant report

Variant	rs16826679
Chromosome Location	chr3:156372110-156372111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1397192	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4680294	0.81[CEU][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs4680295	0.81[CEU][hapmap];0.89[JPT][hapmap];0.80[MKK][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs66808167	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67423646	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6778962	0.88[CEU][hapmap]
rs6790457	0.88[CEU][hapmap]
rs73168612	0.91[EUR][1000 genomes]
rs73168615	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7628802	0.88[CEU][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs16826679	SSR3	cis	parietal	SCAN
rs16826679	IQCJ	cis	parietal	SCAN
rs16826679	MLF1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156360000-156376600	Weak transcription	Psoas Muscle	Psoas
2	chr3:156371800-156373600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:156372000-156374000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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